JSME Molecule Editor Distribution

This distribution contains two directories:

• jsme - the actual JSME code - every file in the directory is a JavaScript code optimized for specific browser
• api_javadoc - the JSME API - please note that although the JSME is in JavaScript, the documentation was generated automatically and therefore follows the Java conventions, anyway it should provide sufficient information to call low-level JSME functions

Example pages:

• JSME_minimal.html minimalistic example how to incorporate JSME into a web page
• JSME_test.html Example containing description of various program options
• JME_to_JSME_simple.html Adapt a page with the JME Java applet to use JSME
• JME_to_JSME.html Adapt a page with the JME Java applet to use JSME
• JSME_dnd_demo.html Example illustrating JSME drag-and-drop capabilities
• JSME_atom_highlight_demo.html Example of atom highlighting
• JSME_smiles_atom_highlight.html Example of atom highlighting inside a SMILES
• JSME_chemical_resolver_demo.html JSME can communicate with the Chemical Identifier Resolver service at NIH and automatically retrieve pasted molecules
• JSME_callback_and_mark.htmlJavaScript callback for structure modification. Atom marking
• JSME_access_internal_data.htmlAccess the chemical data of the structures and reactions depicted in the editor
• JSME_resize.html Resize the applet
• JSME_autoresize.html Resize the applet when the window size changes
• JSME_depict_smiles.html JSME in depict mode initialized with a SMILES
• JSME_Rgroups.html Handling of R groups
• JSME_depict_edit_toggle.html Toggle between depict and edit mode
• JSME_smiles_atom_highlight.html Show SMILES with atom highlight
• JSME_depict_action.html Depict mode with action enabled dynamically
• JSME_additional_data.html JSME_save custom data into atoms and bonds, custom background coloring
• JSME_parent_and_metabolites.html Setup for metabolites generation that uses custom templates
• JSME_template.html Creation of custom templates
• JSME_template_aminoacids.html Attempt to create a peptide builder
• JSME_functional_group_coloring.htmlShow how to create a custom background color palette for atoms
• JSME_alternative_look.htmllCustomization of the JSME look
• JSME_custom_x_shortcuts.htmlCreate custom keyboard shortcuts
• JSME_inchi_direct.html Show how to use the provided InChI library
• JSME_inchi_direct_interactive.html Another example to show how to use the provided InChI library
• JSME_test_api.htmlTest JSApplet.JSME.replaceAllAppletsByJSME
• JSME_SVG.htmlSVG generation
• JSME_editor_plus_SVG.htmlSVG generation
• JSME_hidden.htmlJSME in a hidden div
• JSME_dojo.htmlExample showing how to dynamically load JSME with another dynamic loading library

This distribution contains also many test pages that are used by the developers to check the behavior and performance of JSME:

• test_bootstrap.html Check the compatibility with the bootstrap CSS
• test_depict_many.html Display of 200 chemical identical structures in JSME format
• test_depict_many_smiles.html Display of 200 chemical structures in SMILES format
• test_depict_one_smiles_in_table.html Display of 1chemical structure in SMILES format inside a dynamically created table
• test_depict_many_smiles_in_table.html Display of 100 chemical structures in SMILES format inside a dynamically created table
• test_pubchem_aspirin_depict.html Display of 121 chemical structures in MOL format inside a dynamically created table
• test_depict_patent_reactions_smirks.html Display of 200 chemical reactions in SMIRKS format
• test_resize_and_replace_jme.htmlTest dynamic resizing and replaceAllAppletsByJSME
• test_hidden_iframe.htmlShow and hide JSME embedded in an iframe

And some other files:

• license.txt contains text of the BSD license under which the JSME is distributed
• release_notes.txt provides JSME changelog